Genome Composition and Divergence of the Novel Coronavirus (2019-nCoV) Originating in China
Identifieur interne : 000614 ( 2020/Analysis ); précédent : 000613; suivant : 000615Genome Composition and Divergence of the Novel Coronavirus (2019-nCoV) Originating in China
Auteurs : Aiping Wu [République populaire de Chine] ; Yousong Peng [République populaire de Chine] ; Baoying Huang [République populaire de Chine] ; Xiao Ding [République populaire de Chine] ; Xianyue Wang [République populaire de Chine] ; Peihua Niu [République populaire de Chine] ; Jing Meng [République populaire de Chine] ; Zhaozhong Zhu [République populaire de Chine] ; Zheng Zhang [République populaire de Chine] ; Jiangyuan Wang [République populaire de Chine] ; Jie Sheng [République populaire de Chine] ; Lijun Quan [République populaire de Chine] ; Zanxian Xia [République populaire de Chine] ; Wenjie Tan [République populaire de Chine] ; Genhong Cheng [États-Unis] ; Taijiao Jiang [République populaire de Chine]Source :
- Cell Host & Microbe [ 1931-3128 ] ; 2020.
Descripteurs français
- KwdFr :
- MESH :
- Wicri :
- geographic : République populaire de Chine.
English descriptors
- KwdEn :
- MESH :
- geographic : China.
- classification : Betacoronavirus.
- virology : Coronavirus Infections, Pneumonia, Viral.
- Amino Acid Substitution, Genome, Viral, Middle East Respiratory Syndrome Coronavirus, Pandemics, Phylogeny, SARS Virus.
Abstract
An in-depth annotation of the newly discovered coronavirus (2019-nCoV) genome has revealed differences between 2019-nCoV and severe acute respiratory syndrome (SARS) or SARS-like coronaviruses. A systematic comparison identified 380 amino acid substitutions between these coronaviruses, which may have caused functional and pathogenic divergence of 2019-nCoV.
Url:
DOI: 10.1016/j.chom.2020.02.001
PubMed: 32035028
PubMed Central: 7154514
Affiliations:
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PMC:7154514Le document en format XML
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Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, Los Angeles, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, Los Angeles</wicri:regionArea><placeName><settlement type="city">Los Angeles</settlement><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Jiang, Taijiao" sort="Jiang, Taijiao" uniqKey="Jiang T" first="Taijiao" last="Jiang">Taijiao Jiang</name><affiliation wicri:level="1"><nlm:aff id="aff1">Center for Systems Medicine, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100005, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Center for Systems Medicine, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College, 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type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="aff7">Suzhou Institute of Systems Medicine, Suzhou, Jiangsu 215123, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Suzhou Institute of Systems Medicine, Suzhou, Jiangsu 215123</wicri:regionArea><wicri:noRegion>Jiangsu 215123</wicri:noRegion></affiliation></author><author><name sortKey="Peng, Yousong" sort="Peng, Yousong" uniqKey="Peng Y" first="Yousong" last="Peng">Yousong Peng</name><affiliation wicri:level="1"><nlm:aff id="aff2">College of Biology, Hunan Provincial Key Laboratory of Medical Virology, Hunan University, Changsha 410082, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Biology, Hunan Provincial Key Laboratory of Medical Virology, Hunan University, Changsha 410082</wicri:regionArea><wicri:noRegion>Changsha 410082</wicri:noRegion></affiliation></author><author><name sortKey="Huang, Baoying" sort="Huang, Baoying" uniqKey="Huang B" first="Baoying" last="Huang">Baoying Huang</name><affiliation wicri:level="1"><nlm:aff id="aff3">Key Laboratory of Medical Virology, National Health and Family Planning Commission, National Institute for Viral Disease Control and Prevention, China CDC, Beijing 102206, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Medical Virology, National Health and Family Planning Commission, National Institute for Viral Disease Control and Prevention, China CDC, Beijing 102206</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Ding, Xiao" sort="Ding, Xiao" uniqKey="Ding X" first="Xiao" last="Ding">Xiao Ding</name><affiliation wicri:level="1"><nlm:aff id="aff1">Center for Systems Medicine, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100005, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Center for Systems Medicine, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100005</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="aff7">Suzhou Institute of Systems Medicine, Suzhou, Jiangsu 215123, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Suzhou Institute of Systems Medicine, Suzhou, Jiangsu 215123</wicri:regionArea><wicri:noRegion>Jiangsu 215123</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Xianyue" sort="Wang, Xianyue" uniqKey="Wang X" first="Xianyue" last="Wang">Xianyue Wang</name><affiliation wicri:level="1"><nlm:aff id="aff1">Center for Systems Medicine, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100005, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Center for Systems Medicine, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100005</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="aff7">Suzhou Institute of Systems Medicine, Suzhou, Jiangsu 215123, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Suzhou Institute of Systems Medicine, Suzhou, Jiangsu 215123</wicri:regionArea><wicri:noRegion>Jiangsu 215123</wicri:noRegion></affiliation></author><author><name sortKey="Niu, Peihua" sort="Niu, Peihua" uniqKey="Niu P" first="Peihua" last="Niu">Peihua Niu</name><affiliation wicri:level="1"><nlm:aff id="aff3">Key Laboratory of Medical Virology, National Health and Family Planning Commission, National Institute for Viral Disease Control and Prevention, China CDC, Beijing 102206, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Medical Virology, National Health and Family Planning Commission, National Institute for Viral Disease Control and Prevention, China CDC, Beijing 102206</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Meng, Jing" sort="Meng, Jing" uniqKey="Meng J" first="Jing" last="Meng">Jing Meng</name><affiliation wicri:level="1"><nlm:aff id="aff1">Center for Systems Medicine, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100005, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Center for Systems Medicine, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100005</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="aff7">Suzhou Institute of Systems Medicine, Suzhou, Jiangsu 215123, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Suzhou Institute of Systems Medicine, Suzhou, Jiangsu 215123</wicri:regionArea><wicri:noRegion>Jiangsu 215123</wicri:noRegion></affiliation></author><author><name sortKey="Zhu, Zhaozhong" sort="Zhu, Zhaozhong" uniqKey="Zhu Z" first="Zhaozhong" last="Zhu">Zhaozhong Zhu</name><affiliation wicri:level="1"><nlm:aff id="aff2">College of Biology, Hunan Provincial Key Laboratory of Medical Virology, Hunan University, Changsha 410082, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Biology, Hunan Provincial Key Laboratory of Medical Virology, Hunan University, Changsha 410082</wicri:regionArea><wicri:noRegion>Changsha 410082</wicri:noRegion></affiliation></author><author><name sortKey="Zhang, Zheng" sort="Zhang, Zheng" uniqKey="Zhang Z" first="Zheng" last="Zhang">Zheng Zhang</name><affiliation wicri:level="1"><nlm:aff id="aff2">College of Biology, Hunan Provincial Key Laboratory of Medical Virology, Hunan University, Changsha 410082, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Biology, Hunan Provincial Key Laboratory of Medical Virology, Hunan University, Changsha 410082</wicri:regionArea><wicri:noRegion>Changsha 410082</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Jiangyuan" sort="Wang, Jiangyuan" uniqKey="Wang J" first="Jiangyuan" last="Wang">Jiangyuan Wang</name><affiliation wicri:level="1"><nlm:aff id="aff1">Center for Systems Medicine, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100005, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Center for Systems Medicine, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100005</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="aff7">Suzhou Institute of Systems Medicine, Suzhou, Jiangsu 215123, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Suzhou Institute of Systems Medicine, Suzhou, Jiangsu 215123</wicri:regionArea><wicri:noRegion>Jiangsu 215123</wicri:noRegion></affiliation></author><author><name sortKey="Sheng, Jie" sort="Sheng, Jie" uniqKey="Sheng J" first="Jie" last="Sheng">Jie Sheng</name><affiliation wicri:level="1"><nlm:aff id="aff1">Center for Systems Medicine, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100005, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Center for Systems Medicine, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100005</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="aff7">Suzhou Institute of Systems Medicine, Suzhou, Jiangsu 215123, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Suzhou Institute of Systems Medicine, Suzhou, Jiangsu 215123</wicri:regionArea><wicri:noRegion>Jiangsu 215123</wicri:noRegion></affiliation></author><author><name sortKey="Quan, Lijun" sort="Quan, Lijun" uniqKey="Quan L" first="Lijun" last="Quan">Lijun Quan</name><affiliation wicri:level="1"><nlm:aff id="aff4">School of Computer Science and Technology, Soochow University, Suzhou, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Computer Science and Technology, Soochow University, Suzhou</wicri:regionArea><wicri:noRegion>Suzhou</wicri:noRegion></affiliation></author><author><name sortKey="Xia, Zanxian" sort="Xia, Zanxian" uniqKey="Xia Z" first="Zanxian" last="Xia">Zanxian Xia</name><affiliation wicri:level="1"><nlm:aff id="aff5">Department of Cell Biology, School of Life Science, Central South University, Changsha 410013, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Department of Cell Biology, School of Life Science, Central South University, Changsha 410013</wicri:regionArea><wicri:noRegion>Changsha 410013</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff8">Hunan Key Laboratory of Animal Models for Human Diseases, Hunan Key Laboratory of Medical Genetics & Center for Medical Genetics, School of Life Science, Central South University, Changsha 410013, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Hunan Key Laboratory of Animal Models for Human Diseases, Hunan Key Laboratory of Medical Genetics & Center for Medical Genetics, School of Life Science, Central South University, Changsha 410013</wicri:regionArea><wicri:noRegion>Changsha 410013</wicri:noRegion></affiliation></author><author><name sortKey="Tan, Wenjie" sort="Tan, Wenjie" uniqKey="Tan W" first="Wenjie" last="Tan">Wenjie Tan</name><affiliation wicri:level="1"><nlm:aff id="aff3">Key Laboratory of Medical Virology, National Health and Family Planning Commission, National Institute for Viral Disease Control and Prevention, China CDC, Beijing 102206, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Medical Virology, National Health and Family Planning Commission, National Institute for Viral Disease Control and Prevention, China CDC, Beijing 102206</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Cheng, Genhong" sort="Cheng, Genhong" uniqKey="Cheng G" first="Genhong" last="Cheng">Genhong Cheng</name><affiliation wicri:level="3"><nlm:aff id="aff6">Department of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, Los Angeles, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, Los Angeles</wicri:regionArea><placeName><settlement type="city">Los Angeles</settlement><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Jiang, Taijiao" sort="Jiang, Taijiao" uniqKey="Jiang T" first="Taijiao" last="Jiang">Taijiao Jiang</name><affiliation wicri:level="1"><nlm:aff id="aff1">Center for Systems Medicine, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100005, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Center for Systems Medicine, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100005</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="aff7">Suzhou Institute of Systems Medicine, Suzhou, Jiangsu 215123, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Suzhou Institute of Systems Medicine, Suzhou, Jiangsu 215123</wicri:regionArea><wicri:noRegion>Jiangsu 215123</wicri:noRegion></affiliation></author></analytic><series><title level="j">Cell Host & Microbe</title><idno type="ISSN">1931-3128</idno><idno type="eISSN">1934-6069</idno><imprint><date when="2020">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Substitution</term><term>Betacoronavirus (classification)</term><term>China</term><term>Coronavirus Infections (virology)</term><term>Genome, Viral</term><term>Middle East Respiratory Syndrome Coronavirus</term><term>Pandemics</term><term>Phylogeny</term><term>Pneumonia, Viral (virology)</term><term>SARS Virus</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Chine</term><term>Coronavirus du syndrome respiratoire du Moyen-Orient</term><term>Génome viral</term><term>Infections à coronavirus (virologie)</term><term>Pandémies</term><term>Phylogénie</term><term>Pneumopathie virale (virologie)</term><term>Substitution d'acide aminé</term><term>Virus du SRAS</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>China</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Betacoronavirus</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Infections à coronavirus</term><term>Pneumopathie virale</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Coronavirus Infections</term><term>Pneumonia, Viral</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Amino Acid Substitution</term><term>Genome, Viral</term><term>Middle East Respiratory Syndrome Coronavirus</term><term>Pandemics</term><term>Phylogeny</term><term>SARS Virus</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Chine</term><term>Coronavirus du syndrome respiratoire du Moyen-Orient</term><term>Génome viral</term><term>Pandémies</term><term>Phylogénie</term><term>Substitution d'acide aminé</term><term>Virus du SRAS</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>République populaire de Chine</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>An in-depth annotation of the newly discovered coronavirus (2019-nCoV) genome has revealed differences between 2019-nCoV and severe acute respiratory syndrome (SARS) or SARS-like coronaviruses. A systematic comparison identified 380 amino acid substitutions between these coronaviruses, which may have caused functional and pathogenic divergence of 2019-nCoV.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Cui, J" uniqKey="Cui J">J. Cui</name></author><author><name sortKey="Li, F" uniqKey="Li F">F. Li</name></author><author><name sortKey="Shi, Z L" uniqKey="Shi Z">Z.L. Shi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Drosten, C" uniqKey="Drosten C">C. Drosten</name></author><author><name sortKey="Kellam, P" uniqKey="Kellam P">P. Kellam</name></author><author><name sortKey="Memish, Z A" uniqKey="Memish Z">Z.A. Memish</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ge, X Y" uniqKey="Ge X">X.Y. Ge</name></author><author><name sortKey="Li, J L" uniqKey="Li J">J.L. 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Lu</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>République populaire de Chine</li><li>États-Unis</li></country><region><li>Californie</li></region><settlement><li>Los Angeles</li><li>Pékin</li></settlement></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Wu, Aiping" sort="Wu, Aiping" uniqKey="Wu A" first="Aiping" last="Wu">Aiping Wu</name></noRegion><name sortKey="Ding, Xiao" sort="Ding, Xiao" uniqKey="Ding X" first="Xiao" last="Ding">Xiao Ding</name><name sortKey="Ding, Xiao" sort="Ding, Xiao" uniqKey="Ding X" first="Xiao" last="Ding">Xiao Ding</name><name sortKey="Huang, Baoying" sort="Huang, Baoying" uniqKey="Huang B" first="Baoying" last="Huang">Baoying Huang</name><name sortKey="Jiang, Taijiao" sort="Jiang, Taijiao" uniqKey="Jiang T" first="Taijiao" last="Jiang">Taijiao Jiang</name><name sortKey="Jiang, Taijiao" sort="Jiang, Taijiao" uniqKey="Jiang T" first="Taijiao" last="Jiang">Taijiao Jiang</name><name sortKey="Meng, Jing" sort="Meng, Jing" uniqKey="Meng J" first="Jing" last="Meng">Jing Meng</name><name sortKey="Meng, Jing" sort="Meng, Jing" uniqKey="Meng J" first="Jing" last="Meng">Jing Meng</name><name sortKey="Niu, Peihua" sort="Niu, Peihua" uniqKey="Niu P" first="Peihua" last="Niu">Peihua Niu</name><name sortKey="Peng, Yousong" sort="Peng, Yousong" uniqKey="Peng Y" first="Yousong" last="Peng">Yousong Peng</name><name sortKey="Quan, Lijun" sort="Quan, Lijun" uniqKey="Quan L" first="Lijun" last="Quan">Lijun Quan</name><name sortKey="Sheng, Jie" sort="Sheng, Jie" uniqKey="Sheng J" first="Jie" last="Sheng">Jie Sheng</name><name sortKey="Sheng, Jie" sort="Sheng, Jie" uniqKey="Sheng J" first="Jie" last="Sheng">Jie Sheng</name><name sortKey="Tan, Wenjie" sort="Tan, Wenjie" uniqKey="Tan W" first="Wenjie" last="Tan">Wenjie Tan</name><name sortKey="Wang, Jiangyuan" sort="Wang, Jiangyuan" uniqKey="Wang J" first="Jiangyuan" last="Wang">Jiangyuan Wang</name><name sortKey="Wang, Jiangyuan" sort="Wang, Jiangyuan" uniqKey="Wang J" first="Jiangyuan" last="Wang">Jiangyuan Wang</name><name sortKey="Wang, Xianyue" sort="Wang, Xianyue" uniqKey="Wang X" first="Xianyue" last="Wang">Xianyue Wang</name><name sortKey="Wang, Xianyue" sort="Wang, Xianyue" uniqKey="Wang X" first="Xianyue" last="Wang">Xianyue Wang</name><name sortKey="Wu, Aiping" sort="Wu, Aiping" uniqKey="Wu A" first="Aiping" last="Wu">Aiping Wu</name><name sortKey="Xia, Zanxian" sort="Xia, Zanxian" uniqKey="Xia Z" first="Zanxian" last="Xia">Zanxian Xia</name><name sortKey="Xia, Zanxian" sort="Xia, Zanxian" uniqKey="Xia Z" first="Zanxian" last="Xia">Zanxian Xia</name><name sortKey="Zhang, Zheng" sort="Zhang, Zheng" uniqKey="Zhang Z" first="Zheng" last="Zhang">Zheng Zhang</name><name sortKey="Zhu, Zhaozhong" sort="Zhu, Zhaozhong" uniqKey="Zhu Z" first="Zhaozhong" last="Zhu">Zhaozhong Zhu</name></country><country name="États-Unis"><region name="Californie"><name sortKey="Cheng, Genhong" sort="Cheng, Genhong" uniqKey="Cheng G" first="Genhong" last="Cheng">Genhong Cheng</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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